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nf-core/bamtofastq
Edit

Converts bam or cram files to fastq format and does quality control.

bamtofastqconversioncramtofastq
This is the development version of the pipeline. View the latest v2.2.1 release.
Launch development versionhttps://github.com/nf-core/bamtofastq
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 2.2.1
    • 2.2.0
    • 2.1.1
    • 2.1.0
    • 2.0.0
    • 1.2.0
    • 1.1.0
    • 1.0.0
    • dev
Introduction Usage Parameters Output Releases
  • 2.2.1
  • 2.2.0
  • 2.1.1
  • 2.1.0
  • 2.0.0
  • 1.2.0
  • 1.1.0
  • 1.0.0
  • dev
run with
See the docson how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
subscribers
153
stars
32
open issues
10
open PRs
2
last release
3 months ago
last update
3 months ago
included modules
cat_fastqfastqcfastqutils_infomultiqcsamtools_collatefastq and 7 more modules
included subworkflows
utils_nextflow_pipelineutils_nfcore_pipelineutils_nfschema_plugin
contributors
Github user FriederikeHanssen
Github user SusiJo
Github user maxulysse
Github user famosab
Github user asp8200
Github user ggabernet
Github user matrulda
Github user allaway
Github user edmundmiller
Github user jfy133
Github user mirpedrol
get help
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